Package: CNAnorm
Version: 1.6.0
Date: 2012-08-06
Title: A normalization method for Copy Number Aberration in cancer
        samples
Author: Stefano Berri <s.berri@leeds.ac.uk>, Henry M. Wood
    <H.M.Wood@leeds.ac.uk>, Arief Gusnanto <a.gusnanto@leeds.ac.uk>
Maintainer: Stefano Berri <s.berri@leeds.ac.uk>
Depends: R (>= 2.10.1), DNAcopy, methods
Description: Performs ratio, GC content correction and normalization of 
    data obtained using low coverage (one read every 100-10,000 bp) 
    high troughput sequencing. It performs a "discrete" normalization
    looking for the ploidy of the genome. It will also provide tumour content
    if at least two ploidy states can be found.
License: GPL-2
Imports: methods
biocViews: Bioinformatics, HighThroughputSequencing,
        CopyNumberVariants, Sequencing, Cancer, Lung
Collate: AllGenerics.R AllClasses.R dataFrame2object.R
        initialize-methods.R summary-methods.R smoothseg.R
        bandsegment.R mixtureModel.R normalize.R length-methods.R
        CNAnorm-accessors.R CNAnorm-methods.R Data-methods.R
        makeDefaultGraphParamteres.R
URL: http://www.r-project.org,
LazyLoad: yes
Packaged: 2013-04-04 10:55:18 UTC; biocbuild
Built: R 3.0.0; i386-w64-mingw32; 2013-04-04 16:46:44 UTC; windows
Archs: i386, x64
