Package: qrqc
Version: 1.12.0
Date: 2012-04-17
Title: Quick Read Quality Control
Author: Vince Buffalo
Maintainer: Vince Buffalo <vsbuffalo@ucdavis.edu>
Imports: reshape, ggplot2, Biostrings, biovizBase, graphics, methods,
        plyr, stats
Depends: reshape, ggplot2, Biostrings, biovizBase, brew, xtable,
        Rsamtools (>= 1.3.28), testthat
LinkingTo: Rsamtools
Description: Quickly scans reads and gathers statistics on base and quality
 frequencies, read length, k-mers by position, and frequent sequences. Produces 
  graphical output of statistics for use in quality control pipelines, and an 
  optional HTML quality report. S4 SequenceSummary objects allow specific tests 
  and functionality to be written around the data collected.
License: GPL (>=2)
URL: http://github.com/vsbuffalo/qrqc
biocViews: Sequencing, QualityControl, DataImport, Preprocessing,
        Visualization, HighThroughputSequencing
Packaged: 2012-10-02 07:21:48 UTC; biocbuild
Built: R 2.15.1; i386-pc-mingw32; 2012-10-02 13:12:59 UTC; windows
Archs: i386, x64
