Motif-class             Motif objects
control.seq             control sequence for CTCF peaks
ctcf.motifs             CTCF motifs predicted by motifRG
ctcf.seq                sequence for CTCF peaks
findMotif               De-novo discovery of distriminative motifs
motifLatexTable         create of table of motifs
plotMotif               plot motif sequence matches
refinePWMMotif          create a PWM (Position Weight Model) model
                        given a initial set of motif matches and input
                        sequences
refinePWMMotifExtend    create an extended PWM (Position Weight Model)
                        model given a initial set of motif matches and
                        input sequences
summaryMotif            summarize a list of motifs
