Package: gene2pathway
Version: 2.12.0
Date: 2012-03-21
Title: Prediction of KEGG pathway membership for individual genes based
        on InterPro domain signatures
Author: Holger Froehlich <frohlich@bit.uni-bonn.de>
Description: The package takes a list of genes and predicts to which KEGG pathway each gene maps to. This is done by looking at the InterPro domains of each gene. Each prediction is assigned a confidence score. The package also allows to predict connected component membership of genes within signaling pathways. Separate models for each organism supported by KEGG can be trained.
Maintainer: Holger Froehlich <frohlich@bit.uni-bonn.de>
Reference: H. Froehlich, M. Fellmann, H. Sueltmann, A. Poustka, T.
        Beissbarth, Predicting Pathway Membership via Domain
        Signatures, Bioinformatics, 24:2137-2142, 2008
Depends: R (>= 2.10.0), kernlab (>= 0.9), biomaRt (>= 1.12.1), KEGGSOAP
        (>= 1.12.0), RBGL, AnnotationDbi,org.Dm.eg.db, keggorthology
        (>= 2.0)
Enhances: doMC
Imports: SSOAP, RCurl
LazyLoad: Yes
biocViews: Microarray, Classification, GraphsAndNetworks, Pathways,
        NetworkEnrichment
License: GPL (>= 2)
Packaged: 2012-10-02 06:54:11 UTC; biocbuild
Built: R 2.15.1; ; 2012-10-02 12:54:56 UTC; windows
