addAMDISPeaks           Add AMDIS peak detection results
addChromaTOFPeaks       Add ChromaTOF peak detection results
betweenAlignment        Data Structure for "between" alignment of many
                        GCMS samples
calcTimeDiffs           Calculate retention time shifts from profile
                        alignments
clusterAlignment        Data Structure for a collection of all pairwise
                        alignments of GCMS runs
compress                Compress an alignment object
dp                      Dynamic programming algorithm, given a
                        similarity matrix
eitherMatrix-class      The 'eitherMatrix' class
gatherInfo              Gathers abundance informations from an
                        alignment
imputePeaks             Imputatin of locations of peaks that were
                        undetected
multipleAlignment-class
                        Data Structure for multiple alignment of many
                        GCMS samples
normDotProduct          Normalized Dot Product
parseChromaTOF          Parser for ChromaTOF files
parseELU                Parser for ELU files
peaksAlignment-class    Data Structure for pairwise alignment of 2 GCMS
                        samples
peaksDataset            Data Structure for raw GCMS data and peak
                        detection results
plot                    Plotting functions for GCMS data objects
plotImage               Plot of images of GCMS data
progressiveAlignment-class
                        Data Structure for progressive alignment of
                        many GCMS samples
rmaFitUnit              Fits a robust linear model (RLM) for one
                        metabolite
