DESeq additional methods
                        Extension for the DESeq package
DESeq and edgeR common methods
                        DESeq and edgeR common methods
GenomicRanges additional methods
                        Extension of the GenomicRanges package
IRanges additional methods
                        Extension of the IRanges package
RNAseq class            Class "RNAseq"
ShortRead additional methods
                        Methods extending the ShortRead package
                        functionalities
count                   count method
easyRNASeq              easyRNASeq method
easyRNASeq accessors    Accessors for RNAseq class
easyRNASeq annotation methods
                        Fetch genic annotation from a gff/gtf file or
                        using biomaRt
easyRNASeq correction methods
                        easyRNASeq count table correction to RPKM
easyRNASeq coverage methods
                        Compute the coverage from a Short Read
                        Alignment file
easyRNASeq island methods
                        Identify expressed regions de-novo
easyRNASeq package      Count summarization and normalization pipeline
                        for Next Generation Sequencing data.
easyRNASeq summarization methods
                        Count methods for RNAseq object
edgeR additional methods
                        Extension for the edgeR package
genomeIntervals additional methods
                        Extension for the genomeIntervals package
parallel additional methods
                        parallel additional methods
print methods           Method to print a RNAseq object
show methods            Display the content of a RNAseq object
