basePath	HTMLReport-class
basePath,HTMLReport-method	HTMLReport-class
BaseReport-class	BaseReportType-class
baseUrl	HTMLReport-class
baseUrl,HTMLReport-method	HTMLReport-class
CSVFile	CSVFile
CSVFile-class	CSVFile-class
DataPackage	DataPackage
DataPackage-class	DataPackage-class
dependencies	DataPackage-class
dependencies,DataPackage-method	DataPackage-class
dependencies<-	DataPackage-class
dependencies<-,DataPackage,character-method	DataPackage-class
filename	filename-methods
filename,CSVFile-method	filename-methods
filename,HTMLReport-method	filename-methods
filename-methods	filename-methods
finish	finish-methods
finish,DataPackage-method	finish-methods
finish,HTMLReport-method	finish-methods
finish-methods	finish-methods
HTMLReport	HTMLReport
HTMLReport-class	HTMLReport-class
mockRnaSeqData	mockRnaSeqData
name	BaseReportType-class
name,BaseReport-method	BaseReportType-class
name<-,BaseReport,character-method	BaseReportType-class
name<-,CSVFile,character-method	CSVFile-class
name<-,HTMLReport,character-method	HTMLReport-class
page	HTMLReport-class
page,HTMLReport-method	HTMLReport-class
page<-	HTMLReport-class
page<-,HTMLReport,character-method	HTMLReport-class
path	BaseReportType-class
path,BaseReport-method	BaseReportType-class
path,DataPackage-method	DataPackage-class
path,HTMLReport-method	HTMLReport-class
publish	publish-methods
publish,ANY,DataPackage-method	publish-methods
publish,ANY,HTMLReport-method	publish-methods
publish,ANY,list-method	publish-methods
publish,character,DataPackage-method	publish-methods
publish,data.frame,CSVFile-method	publish-methods
publish,data.frame,DataPackage-method	publish-methods
publish,data.frame,HTMLReport-method	publish-methods
publish,DGEExact,ANY-method	publish-methods
publish,DGEExact,HTMLReport-method	publish-methods
publish,GeneSetCollection,ANY-method	publish-methods
publish,GeneSetCollection,HTMLReport-method	publish-methods
publish,GOHyperGResult,ANY-method	publish-methods
publish,GOHyperGResult,HTMLReport-method	publish-methods
publish,HTMLReport,HTMLReport-method	publish-methods
publish,HyperGResultBase,HTMLReport-method	publish-methods
publish,list,HTMLReport-method	publish-methods
publish,MArrayLM,ANY-method	publish-methods
publish,MArrayLM,HTMLReport-method	publish-methods
publish,PFAMHyperGResult,ANY-method	publish-methods
publish,PFAMHyperGResult,HTMLReport-method	publish-methods
publish,trellis,HTMLReport-method	publish-methods
publish-methods	publish-methods
reportDirectory	BaseReportType-class
reportDirectory,BaseReport-method	BaseReportType-class
reportDirectory<-	BaseReportType-class
reportDirectory<-,BaseReport,character-method	BaseReportType-class
reporting.theme	reporting.theme
show,BaseReport-method	BaseReportType-class
show,HTMLReport-method	HTMLReport-class
title	BaseReportType-class
title,BaseReport-method	BaseReportType-class
title<-	BaseReportType-class
title<-,BaseReport,character-method	BaseReportType-class
url,HTMLReport-method	HTMLReport-class
validConnection	validConnection
