Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

Documentation for package ‘DeconRNASeq’ version 1.0.0

DESCRIPTION file.
Overview of user guides and package vignettes; browse directory.
Code demos. Use demo() to run them.

Help Pages

condplot	Draw the plot of the condition numbers vs. the number of genes in the signature matrix
datasets	data objects for liver and kidney mixing samples
DeconRNASeq	Function for Deconvolution of Complex Samples from RNA-Seq.
DeconRNASeq.package	package DeconRNASeq contains function "DeconRNASeq", implementing the decomposition of RNA-Seq expression profilings of heterogeneous tissues into cell/tissue type specific expression and cell type concentration based on cell-type-specific reference measurements
DeconRNASeq_package	package DeconRNASeq contains function "DeconRNASeq", implementing the decomposition of RNA-Seq expression profilings of heterogeneous tissues into cell/tissue type specific expression and cell type concentration based on cell-type-specific reference measurements
fraction	mixing fractions for multi-tissues mixing samples
liver_kidney	data objects for liver and kidney mixing samples
multiplot	Draw the plots of proportions of cells determined from deconvolution vs. proportions of the cells actually mixed (when available) with RMSE.
multi_tissue	data objects for multi-tissues mixing samples
proportions	proportions for liver and kidney mixing samples
rmse	Calculate the differences between proportions predicted by deconvolution and the values actually measured
signatures	data objects for liver and kidney pure samples
x.data	data objects for multi-tissues mixing samples
x.signature	data objects for multi-tissues pure samples
x.signature.filtered	filtered signatures for multi-tissues pure samples
x.signature.filtered.optimal	selected signatures from multi-tissues pure samples