Class "upstreamSeqs"

Description

container for a collection of upstream sequences

Objects from the Class

Objects can be created by calls of the form new("upstreamSeqs", ...). Environments are used to store collections of DNAstrings.

Slots

seqs:

Object of class "environment" ~~

chrom:

Object of class "environment" ~~

revComp:

Object of class "environment" ~~

type:

Object of class "environment" ~~

organism:

Object of class "character" ~~

provenance:

Object of class "ANY" ~~

Methods

Nmers

signature(n = "numeric", orf = "character", usobj = "upstreamSeqs"): obtain all subsequences of length n as view elements of a DNA string

keys

signature(x = "upstreamSeqs"): ...

organism

signature(x = "upstreamSeqs"): ...

seqs

signature(x = "upstreamSeqs"): ...

show

signature(object = "upstreamSeqs"): ...

Author(s)

~~who you are~~

Examples

showClass("upstreamSeqs")
data(sceUpstr)
sceUpstr
keys(sceUpstr)[1:5]