Experimental Data Package: harbChIP

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Documentation for package ‘harbChIP’

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allhex utility function: get all hexamers in upstream sequence for an ORF
buildUpstreamSeqs2 workflow component - build an upstreamSeqs instance from a FASTA read
chkAllUS analyze relationship between motif frequency and binding intensity for selected motif and TF
chkMotif4TF analyze relationship between motif frequency and binding intensity for selected motif and TF
getUpstream Class "upstreamSeqs"
harbChIP Experimental Data Package: harbChIP
keys Class "upstreamSeqs"
keys,upstreamSeqs-method Class "upstreamSeqs"
Nmers Class "upstreamSeqs"
Nmers,numeric,character,upstreamSeqs-method Class "upstreamSeqs"
organism Class "upstreamSeqs"
organism,upstreamSeqs-method Class "upstreamSeqs"
sceUpstr Biostrings representations of S. cerevisiae upstream regions
seqs Class "upstreamSeqs"
seqs,upstreamSeqs-method Class "upstreamSeqs"
show,upstreamSeqs-method Class "upstreamSeqs"
upstreamSeqs-class Class "upstreamSeqs"