pedbarrayv9PATH2PROBE      package:pedbarrayv9      R Documentation

_M_a_p _b_e_t_w_e_e_n _K_y_o_t_o _E_n_c_y_c_l_o_p_e_d_i_a _o_f _G_e_n_e_s _a_n_d _G_e_n_o_m_e_s (_K_E_G_G)
_p_a_t_h_w_a_y _i_d_e_n_t_i_f_i_e_r_s _a_n_d _M_a_n_u_f_a_c_t_u_r_e_r _I_d_e_n_t_i_f_i_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     pedbarrayv9PATH2PROBE is an R environment that provides mappings
     between KEGG identifiers and manufacturer identifiers.

_D_e_t_a_i_l_s:

     Each KEGG identifier is mapped to a named vector of manufacturer
     identifiers. The name represents the KEGG identifier and the
     vector contains all manufacturer identifiers that are found in
     that particular pathway. An 'NA' is reported for any KEGG
     identifier that cannot be mapped to any manufacturer identifiers.

     Pathway name for a given pathway identifier can be obtained using
     the KEGG data package that can either be built using AnnBuilder or
     downloaded from Bioconductor <URL: http://www.bioconductor.org>.

     Graphic presentations of pathways are searchable at <URL:
     http://www.genome.ad.jp/kegg/pathway.html> using pathway
     identifiers as keys.

     Mappings were based on data provided by:

     KEGG:\<URL:
     ftp://ftp.genome.ad.jp/pub/kegg/tarfiles/pathway.tar.gz>. Built:
     Release 41.1, February 1, 2007

     Entrez Gene:\<URL: ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/>. Built:
     Source data downloaded from Entrez Gene on Fri Aug 24 19:03:39
     2007

     Package built Fri Aug 24 19:26:27 2007

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.genome.ad.jp/kegg/>

_E_x_a_m_p_l_e_s:

         # Convert the environment to a list
         xx <- as.list(pedbarrayv9PATH2PROBE)
         # Remove pathway identifiers that do not map to any probe id
         xx <- xx[!is.na(xx)]
         if(length(xx) > 0){
             # The probe identifiers for the first two elements of XX
             xx[1:2]
             # Get the first one
             xx[[1]]
         } 

