mguatlas5kPFAM {mguatlas5k} | R Documentation

## Map Manufacturer IDs to Pfam IDs

### Description

mguatlas5kPFAM is an R environment that provides mappings between a manufacturer identifier and the associated Pfam identifiers.

### Details

Each manufacturer identifier maps to a named vector of Pfam identifiers. The name for each Pfam identifier is the IPI accession numbe where this Pfam identifier is found.

If the Pfam is a named NA, it means that the associated Entrez Gene id of this manufacturer identifier is found in an IPI entry of the IPI database, but there is no Pfam identifier in the entry.

If the Pfam is a non-named NA, it means that the associated Entrez Gene id of this manufacturer identifier is not found in any IPI entry of the IPI database.

### References

Kersey P. J., Duarte J., Williams A., Karavidopoulou Y., Birney E., Apweiler R. The International Protein Index: An integrated database for proteomics experiments. Proteomics 4(7): 1985-1988 (2004) http://www.ebi.ac.uk/IPI/IPIhelp.html

### Examples

            # Convert to a list
            xxx <- as.list(mguatlas5kPFAM)
            # randomly display 10 probes
            sample(xxx, 10)

[Package mguatlas5k version 2.0.1 Index]