ath1121501ARACYC        package:ath1121501.db        R Documentation

_M_a_p_p_i_n_g_s _b_e_t_w_e_e_n _p_r_o_b_e _i_d_e_n_t_i_f_i_e_r_s _a_n_d _K_E_G_G _p_a_t_h_w_a_y _i_d_e_n_t_i_f_i_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     AraCyc <URL: http://www.arabidopsis.org/tools/aracyc/> maintains
     pathway data for Arabidopsis thaliana. ath1121501ARACYC maps probe
     identifiers to the common names of the pathways in which the genes
     represented by the probe identifiers are involved. Information is
     obtained from AraCyc.

_D_e_t_a_i_l_s:

     Annotation based on data provided by: Tair (
     ftp://ftp.arabidopsis.org/Pathways/aracyc_dump_20070703 ) on
     2007-Aug2

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.genome.ad.jp/kegg/>

_E_x_a_m_p_l_e_s:

       x <- ath1121501ARACYC
       # Get the probe identifiers that are mapped to pathways
       mapped_probes <- mappedkeys(x)
       # Convert to a list
       xx <- as.list(x[mapped_probes])
       if(length(xx) > 0) {
         # Get the pathways for the first five probes
         xx[1:5]
         # For the first probe
         xx[[1]]
       }

