pfamSMART2AC              package:PFAM              R Documentation

_M_a_p_p_i_n_g_s _f_r_o_m _S_M_A_R_T _I_D _t_o _A_c_c_e_s_s_i_o_n _n_u_m_b_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     Mapping function from SMART ID (SMART) to the associated Accession
     number (AC)

_U_s_a_g_e:

     pfamSMART2AC(smart=NULL)

_A_r_g_u_m_e_n_t_s:

   smart: A character vector of SMART ID or NULL (default)

_D_e_t_a_i_l_s:

     If 'smart' is a vector of SMART ID,  pfamSMART2AC will return a
     list of associated Accession number for the given 'smart'.  If
     'smart' is NULL,  pfamSMART2AC(smart=NULL) (or pfamSMART2AC())
     will return a list of associated Accession number for all the
     SMART ID in the database. Extra information:  None More Details:
     SMART (a Simple Modular Architecture Research Tool, \<URL:
     http://smart.embl-heidelberg.de/>) allows the identification and
     annotation of genetically mobile domains and the analysis of
     domain architectures.  Reference: (1) Schultz et al. (1998) Proc.
     Natl. Acad. Sci. USA 95, 5857-5864.  (2) Letunic et al. (2004)
     Nucleic Acids Res 32, D142-D144

_V_a_l_u_e:

     A list of Accession number.

_A_u_t_h_o_r(_s):

     Ting-Yuan Liu

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.sanger.ac.uk/Software/Pfam/> and <URL:
     ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt>

_E_x_a_m_p_l_e_s:

     ## Not run: 
         SMART2AC <- pfamSMART2AC()
         head(SMART2AC)
         pfamSMART2AC(smart=sample(names(SMART2AC), 3))
     ## End(Not run)

