pfamPROSITEPROFILE2AC          package:PFAM          R Documentation

_M_a_p_p_i_n_g_s _f_r_o_m _P_R_O_S_I_T_E__P_R_O_F_I_L_E _I_D _t_o _A_c_c_e_s_s_i_o_n _n_u_m_b_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     Mapping function from PROSITE\_PROFILE ID (PROSITEPROFILE) to the
     associated Accession number (AC)

_U_s_a_g_e:

     pfamPROSITEPROFILE2AC(prositeprofile=NULL)

_A_r_g_u_m_e_n_t_s:

prositeprofile: A character vector of PROSITE\_PROFILE ID or NULL
          (default)

_D_e_t_a_i_l_s:

     If 'prositeprofile' is a vector of PROSITE\_PROFILE ID, 
     pfamPROSITEPROFILE2AC will return a list of associated Accession
     number for the given 'prositeprofile'.  If 'prositeprofile' is
     NULL,  pfamPROSITEPROFILE2AC(prositeprofile=NULL) (or
     pfamPROSITEPROFILE2AC()) will return a list of associated
     Accession number for all the PROSITE\_PROFILE ID in the database.
     Extra information:  None More Details: None

_V_a_l_u_e:

     A list of Accession number.

_A_u_t_h_o_r(_s):

     Ting-Yuan Liu

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.sanger.ac.uk/Software/Pfam/> and <URL:
     ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt>

_E_x_a_m_p_l_e_s:

     ## Not run: 
         PROSITEPROFILE2AC <- pfamPROSITEPROFILE2AC()
         head(PROSITEPROFILE2AC)
         pfamPROSITEPROFILE2AC(prositeprofile=sample(names(PROSITEPROFILE2AC), 3))
     ## End(Not run)

