pfamPROSITE2AC             package:PFAM             R Documentation

_M_a_p_p_i_n_g_s _f_r_o_m _P_R_O_S_I_T_E _I_D _t_o _A_c_c_e_s_s_i_o_n _n_u_m_b_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     Mapping function from PROSITE ID (PROSITE) to the associated
     Accession number (AC)

_U_s_a_g_e:

     pfamPROSITE2AC(prosite=NULL)

_A_r_g_u_m_e_n_t_s:

 prosite: A character vector of PROSITE ID or NULL (default)

_D_e_t_a_i_l_s:

     If 'prosite' is a vector of PROSITE ID,  pfamPROSITE2AC will
     return a list of associated Accession number for the given
     'prosite'.  If 'prosite' is NULL,  pfamPROSITE2AC(prosite=NULL)
     (or pfamPROSITE2AC()) will return a list of associated Accession
     number for all the PROSITE ID in the database. Extra information: 
     None More Details: PROSITE (\<URL: http://www.expasy.ch/prosite/>)
     is a database of protein families and domains. It consists of
     biologically significant sites, patterns and profiles that help to
     reliably identify to which known protein family (if any) a new
     sequence belongs.  Reference: Hulo N., Sigrist C.J.A., Le Saux V.,
     Langendijk-Genevaux P.S., Bordoli L., Gattiker A., De Castro E.,
     Bucher P., Bairoch A. Recent improvements to the PROSITE database.
     Nucl. Acids. Res. 32:D134-D137(2004)

_V_a_l_u_e:

     A list of Accession number.

_A_u_t_h_o_r(_s):

     Ting-Yuan Liu

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.sanger.ac.uk/Software/Pfam/> and <URL:
     ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt>

_E_x_a_m_p_l_e_s:

     ## Not run: 
         PROSITE2AC <- pfamPROSITE2AC()
         head(PROSITE2AC)
         pfamPROSITE2AC(prosite=sample(names(PROSITE2AC), 3))
     ## End(Not run)

