pfamCAZY2AC               package:PFAM               R Documentation

_M_a_p_p_i_n_g_s _f_r_o_m _C_A_Z_Y _I_D _t_o _A_c_c_e_s_s_i_o_n _n_u_m_b_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     Mapping function from CAZY ID (CAZY) to the associated Accession
     number (AC)

_U_s_a_g_e:

     pfamCAZY2AC(cazy=NULL)

_A_r_g_u_m_e_n_t_s:

    cazy: A character vector of CAZY ID or NULL (default)

_D_e_t_a_i_l_s:

     If 'cazy' is a vector of CAZY ID,  pfamCAZY2AC will return a list
     of associated Accession number for the given 'cazy'.  If 'cazy' is
     NULL,  pfamCAZY2AC(cazy=NULL) (or pfamCAZY2AC()) will return a
     list of associated Accession number for all the CAZY ID in the
     database. Extra information:  None More Details: The CAZy database
     (\<URL: http://afmb.cnrs-mrs.fr/CAZY/>) describes the families of
     structurally-related catalytic and carbohydrate-binding modules
     (or functional domains) of enzymes that degrade, modify, or create
     glycosidic bonds.

_V_a_l_u_e:

     A list of Accession number.

_A_u_t_h_o_r(_s):

     Ting-Yuan Liu

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.sanger.ac.uk/Software/Pfam/> and <URL:
     ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt>

_E_x_a_m_p_l_e_s:

     ## Not run: 
         CAZY2AC <- pfamCAZY2AC()
         head(CAZY2AC)
         pfamCAZY2AC(cazy=sample(names(CAZY2AC), 3))
     ## End(Not run)

