pfamAC2SMART              package:PFAM              R Documentation

_M_a_p_p_i_n_g_s _f_r_o_m _A_c_c_e_s_s_i_o_n _n_u_m_b_e_r _t_o _S_M_A_R_T _I_D

_D_e_s_c_r_i_p_t_i_o_n:

     Mapping function from Accession number (AC) to the associated
     SMART ID (SMART)

_U_s_a_g_e:

     pfamAC2SMART(ac=NULL)

_A_r_g_u_m_e_n_t_s:

      ac: A character vector of Accession number or NULL (default)

_D_e_t_a_i_l_s:

     If 'ac' is a vector of Accession number,  pfamAC2SMART will return
     a list of associated SMART ID for the given 'ac'.  If 'ac' is
     NULL,  pfamAC2SMART(ac=NULL) (or pfamAC2SMART()) will return a
     list of associated SMART ID for all the Accession number in the
     database. Extra information:  None More Details: SMART (a Simple
     Modular Architecture Research Tool, \<URL:
     http://smart.embl-heidelberg.de/>) allows the identification and
     annotation of genetically mobile domains and the analysis of
     domain architectures.  Reference: (1) Schultz et al. (1998) Proc.
     Natl. Acad. Sci. USA 95, 5857-5864.  (2) Letunic et al. (2004)
     Nucleic Acids Res 32, D142-D144

_V_a_l_u_e:

     A list of SMART ID.

_A_u_t_h_o_r(_s):

     Ting-Yuan Liu

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.sanger.ac.uk/Software/Pfam/> and <URL:
     ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt>

_E_x_a_m_p_l_e_s:

     ## Not run: 
         AC2SMART <- pfamAC2SMART()
         head(AC2SMART)
         pfamAC2SMART(ac=sample(names(AC2SMART), 3))
     ## End(Not run)

