SPIKE_INB              package:spikeLI              R Documentation

_B_a_c_t_e_r_i_a _S_p_i_k_e-_i_n _p_r_o_b_e_s_e_t _n_a_m_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This dataset contains the names of the Bacteria probe-sets
     contained in the HGU dataset

_U_s_a_g_e:

     data(SPIKE_INB)

_F_o_r_m_a_t:

     names of the Bacteria probe-sets contained in the HGU dataset

_R_e_f_e_r_e_n_c_e_s:

     E. Carlon and T. Heim, Physica A 362, 433 (2006).

_S_e_e _A_l_s_o:

     'Ivsc', 'IvsDG', 'collapse', 'SPIKE_IN', 'hgu' , 'SPIKE_INA',
     'SPIKE_INH'

_E_x_a_m_p_l_e_s:

     ## you can first check if the data matches the predicted hybridisation value according to the langmuir 
     ## value, from the intensity versus the concentration value
     Ivsc(SPIKE_INB[3])

     ## you can then plot the value of the Intensity of the probe with the predicted value of the hybridisation
     ## according to the Delta G, value
     IvsDG(SPIKE_INB[4],64)

     ## The collapse function will finally plot all the values of the probe set according to 
     ## the langmuir absorption theory

     collapse(SPIKE_INB[2])

     ## By comparing the matched value and the mismatches, you will be able to identify errors which 
     ## could have done while sampling the data, or if the error happens repeatedly this will show errors 
     ## which will have happened while sequencing old data.

