zoomGenome              package:snapCGH              R Documentation

_I_n_t_e_r_a_c_t_i_v_e _p_l_o_t _o_f _t_h_e _w_h_o_l_e _g_e_n_o_m_e

_D_e_s_c_r_i_p_t_i_o_n:

     Plot splitting the screen into two.  The top windows displays the
     entire genome, whilst the bottom plots a single chromosome.  The
     plot is interactive allowing the user to click on a chromosome in
     the upper plot and have it displayed below.  Clicking to either
     side of the plot borders ends the interactivity.

_U_s_a_g_e:

     zoomGenome(..., array = 1, colors = NULL, chrominfo = chrominfo.Mb)

_A_r_g_u_m_e_n_t_s:

     ...: Objects of type 'SegList'

   array: Specify which array should be plotted.

  colors: Vector specify the colors for each of the SegLists

chrominfo: chromosomal information associated with the mapping of the
          data.

_D_e_t_a_i_l_s:

     If colors is unspecified then all objects passed to this function
     will be plotted in blue.  Since this makes it quite hard to tell
     which is which it is highly recommened to specify the colors
     vector if more than one object is being passe to this function.

_A_u_t_h_o_r(_s):

     Mike Smith

