Entry: PairContrast
Aliases: PairContrast
Keywords: models
Description: Pairwise comparison matrix
URL: ../../../library/maanova/html/PairContrast.html

Entry: Rmaanova.version
Aliases: Rmaanova.version
Keywords: utilities
Description: Display the current version of the package
URL: ../../../library/maanova/html/Rmaanova.version.html

Entry: abf1
Aliases: abf1
Keywords: datasets
Description: Data for a 18-array Affymetrix experiment
URL: ../../../library/maanova/html/abf1.html

Entry: adjPval
Aliases: adjPval
Keywords: utilities
Description: Generate FDR adjusted P values for F test result.
URL: ../../../library/maanova/html/adjPval.html

Entry: arrayview
Aliases: arrayview
Keywords: hplot
Description: View the layout of input data
URL: ../../../library/maanova/html/arrayview.html

Entry: consensus
Aliases: consensus
Keywords: cluster
Description: Build consensus tree out of bootstrap cluster result
URL: ../../../library/maanova/html/consensus.html

Entry: dyeswapfilter
Aliases: dyeswapfilter
Keywords: models
Description: Gene filter for dye-swap experiment
URL: ../../../library/maanova/html/dyeswapfilter.html

Entry: fill.missing
Aliases: fill.missing
Keywords: utilities
Description: Fill in missing data
URL: ../../../library/maanova/html/fill.missing.html

Entry: fitmaanova
Aliases: fitmaanova
Keywords: models
Description: Fit ANOVA model for Micro Array experiment
URL: ../../../library/maanova/html/fitmaanova.html

Entry: fom
Aliases: fom
Keywords: models
Description: Figure of Merit
URL: ../../../library/maanova/html/fom.html

Entry: geneprofile
Aliases: geneprofile
Keywords: hplot
Description: Expression plot for selected genes
URL: ../../../library/maanova/html/geneprofile.html

Entry: gridcheck
Aliases: gridcheck
Keywords: hplot
Description: Plot grid-by-grid data comparison for arrays
URL: ../../../library/maanova/html/gridcheck.html

Entry: kidney.raw
Aliases: kidney.raw kidney
Keywords: datasets
Description: Kidney Data from CAMDA
URL: ../../../library/maanova/html/kidney.html

Entry: maanova-internal
Aliases: JS JSshrinker buildtree calPval calVolcanoXval caldf check.confounding checkContrast cluster2num consensus.hc consensus.kmean dist.cor findgroup getPval.table getPval.volcano glowess intprod linlog linlog.engine linlogshift locateTerm make.ratio makeAB makeCompMat makeD makeDesign makeHq makeShuffleGroup makeZiZi makelevel makeModel matest.engine matest.perm meanvarlog meanvarlogold mixture plot.consensus.hc plot.consensus.kmean print.madata print.summary.madata print.summary.mamodel ratioVarplot rlowess shift shuffle.maanova solveMME summary.madata summary.mamodel summarytable.ftest summarytable.ttest transform.rawdata volcano.ftest volcano.ttest blkdiag colmax colmin makeContrast matrank matsort mixed norm num2yn ones parseformula pinv ma.svd repmat rowmax rowmin sumrow zeros fdr
Keywords: internal
Description: Internal maanova functions
URL: ../../../library/maanova/html/maanova-internal.html

Entry: macluster
Aliases: macluster
Keywords: cluster
Description: Clustering analysis for Microarray experiment
URL: ../../../library/maanova/html/macluster.html

Entry: matest
Aliases: matest
Keywords: models
Description: Statistical test for Microarray experiment
URL: ../../../library/maanova/html/matest.html

Entry: read.madata
Aliases: read.madata
Keywords: IO
Description: Read Microarray data
URL: ../../../library/maanova/html/read.madata.html

Entry: resiplot
Aliases: resiplot
Keywords: hplot
Description: Residual plot for Microarray Experiment
URL: ../../../library/maanova/html/resiplot.html

Entry: riplot
Aliases: riplot
Keywords: hplot
Description: Ratio intensity plot for 2-dye Microarray experiment
URL: ../../../library/maanova/html/riplot.html

Entry: subset.madata
Aliases: subset.madata
Keywords: utilities
Description: Subsetting Microarray data objects
URL: ../../../library/maanova/html/subset.madata.html

Entry: summarytable
Aliases: summarytable
Keywords: utilities
Description: Summarize the matest result.
URL: ../../../library/maanova/html/summarytable.html

Entry: transform.madata
Aliases: transform.madata
Keywords: smooth
Description: Micro Array experiment data transformation
URL: ../../../library/maanova/html/transform.madata.html

Entry: varplot
Aliases: varplot
Keywords: dplot
Description: Variance component plot
URL: ../../../library/maanova/html/varplot.html

Entry: volcano
Aliases: volcano
Keywords: hplot
Description: Volcano plot for F test results
URL: ../../../library/maanova/html/volcano.html

Entry: write.madata
Aliases: write.madata
Keywords: IO
Description: Write Micro Array data to a TAB delimited simple text file
URL: ../../../library/maanova/html/write.madata.html
