Convert an old S3 class cellHTS object to the new S4 class cellHTS object

Description

Convert an old S3 class cellHTS object obtained using cellHTS package to new S4 class cellHTS object(s).

Usage

convertOldCellHTS(oldObject)

Arguments

Details

This function converts an old S3 cellHTS class object called oldObjt into S4 class cellHTS object(s).

Value

The function returns a list containing at least one cellHTS objects named "raw" which corresponds to a unnormalized cellHTS object (i.e. comprising the raw data stored in oldObject). Depending on the state of oldObject (normalized and scored), the other components of this list can be: "normalized": a S4 class cellHTS object containing normalized data, and "scored": a S4 class cellHTS object containing scored data.

Author(s)

Ligia P. Bras ligia@ebi.ac.uk

References

Boutros, M., Bras, L.P. and Huber, W. (2006) Analysis of cell-based RNAi screens, Genome Biology 7, R66.

See Also

Examples

    data(oldKcViabSmall)
    out <-  convertOldCellHTS(oldKcViabSmall)
    x <- out[["raw"]]
    x