ParameterList-class     Class "ParameterList" - List to store all the
                        parameters
RG                      Experiment Data: RGList\_CALIB Example
RGList_CALIB-class      Red, Green Intensity List - Class
SpikeList-class         Class "SpikeList" - Spike Intensity and
                        Concentration List
[.RGList_CALIB          Subset of RGList\_CALIB, SpikeList or
                        ParameterList object
adjustP2                Adjust model parameter P2
calibReadMe             View CALIB readme file
cbind.RGList_CALIB      Combine RGList\_CALIB, SpikeList or
                        ParameterList objects
dim.RGList_CALIB        Retrieve the Dimensions of an RGList\_CALIB or
                        SpikeList object
dimnames.RGList_CALIB   Retrieve the Dimension Names of an
                        RGList\_CALIB or SpikeList object.
estimateParameter       Estimate model parameter from spikes
getColClasses           Construct colClasses vector for use within
                        read.rg function
merge.RGList_CALIB      Merge RGList\_CALIB or SpikeList objects
normalizeData           Normalization: estimation of absolute
                        expression levels
normdata                Example of normalized data
parameter               Calibration Model parameter: ParameterList
                        Example
plotNormalizedData      plot estimated absolute levels of two
                        conditions
plotSpikeCI             plot spike concentration vs measured intensity
plotSpikeHI             plot hybridized target vs intensity
plotSpikeRG             plot spike intensity R vs G
plotSpikeSpotError      plot spot error of spikes.
read.rg                 Read RGList\_CALIB from Image Analysis Output
                        Files
read.spike              Read SpikeList from a RGList\_CALIB and
                        Concentration files
spike                   Experiment Data: SpikeList Example
