pfamBuilder            package:AnnBuilder            R Documentation

_B_u_i_l_d_i_n_g _F_u_n_c_t_i_o_n_s _f_o_r _t_h_e _D_a_t_a _P_a_c_k_a_g_e _o_f _P_f_a_m _D_a_t_a_b_a_s_e

_D_e_s_c_r_i_p_t_i_o_n:

     These functions builds a data package for Pfam database

_U_s_a_g_e:

     pfamBuilder(pkgName="PFAM", pkgPath, version, author,
                 fromWeb=TRUE, lazyLoad=TRUE, useTmp=FALSE, sqlFile=NULL)

_A_r_g_u_m_e_n_t_s:

 pkgName: 'pkgName' a character string for the name of the data package
          to be built.  The default is "PFAM"

 pkgPath: 'pkgPath' a character string for the directory where the data
          package to be built will be stored

 version: 'version' a character string for the version number of the
          data package to be built

  author: 'author' a named vector of two character strings with a name
          element for the name and an address element of email address
          of the maintainer of the data package

 fromWeb: 'fromWeb' a boolean to indicate whether the data from GO
          should be downloaded from the web or read locally. The url
          for GO should be the file name of a local file if fromWeb is
          FALSE. For windows users, the data file from GO should be
          downloaded/unzipped manually and set the url for GO to be the
          name of the local file

lazyLoad: 'lazyLoad' a boolean indicating whether a lazy load database
          will be created

  useTmp: 'useTmp' a boolean.  If TREU, the sqlite file will be saved
          to tempdir.  Otherwise, it will be saved to the data
          subdirectory of the package.  The default is FALSE.

 sqlFile: 'sqlFile' a character string to indicate the full path of the
          local SQL file.  The default is NULL so that the SQL file
          will be downloaded from the Pfam website

_A_u_t_h_o_r(_s):

     Ting-Yuan Liu

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.sanger.ac.uk/Software/Pfam/>

_E_x_a_m_p_l_e_s:

     # Not provided. 

