EG-class             package:AnnBuilder             R Documentation

_C_l_a_s_s "_E_G" _h_a_n_d_l_e_s _d_a_t_a _p_r_o_v_i_d_e_d _b_y _E_n_t_r_e_z _G_e_n_e

_D_e_s_c_r_i_p_t_i_o_n:

     Entrez Gene contains data that were previously provided by
     LocusLink. The EG class represents objects that contains the
     needed information for gettting and processing the data

_O_b_j_e_c_t_s _f_r_o_m _t_h_e _C_l_a_s_s:

     Objects can be created by calls of the form 'new("EG", ...)'. A
     constructor ('EG' is available and should be used to instantiate
     objects of EG).

_S_l_o_t_s:

     '_a_c_c_e_s_s_i_o_n': Object of class '"character"' for the name of the
          file containing mappings between GenBank accession numbers
          and Gene ids

     '_i_n_f_o': Object of class '"character"' for the name of the file
          containing mappings between Gene ids and symbol, chromosome
          number for genes, cytoband information, and gene name

     '_g_o': Object of class '"character"' for the name of the file
          containing mappings between Gene ids and GO information

     '_p_u_b_m_e_d': Object of class '"character"' for the name of the file
          containing mappings between Gene ids and PubMed ids

     '_r_e_f_s_e_q': Object of class '"character"' for the name of the file
          containing mappings between Gene ids and RefSeq ids

     '_u_n_i_g_e_n_e': Object of class '"character"' for the name of the file
          containing the mappings between Gene ids and UniGene ids

     '_m_i_m': Object of class '"character"' for the name of the file
          containing mappings between Gene ids and OMIM ids

     '_s_r_c_U_r_l': Object of class '"character"' for the root URL where the
          aforementioned files reside

     '_p_a_r_s_e_r': Object of class '"character"' for the name of a Perl
          parser that will be used to parse the source file

     '_b_a_s_e_F_i_l_e': Object of class '"character"' for the name of the base
          file that contains mappings between probe ids and a public
          database ids that will be used to map probe ids to annotation
          data contained in a source file

     '_b_u_i_l_t': Object of class '"character"' for build information of
          the source file

     '_f_r_o_m_W_e_b': Object of class '"logical"' for inficating whether the
          source file should be accessed through the web or locally

_E_x_t_e_n_d_s:

     Class '"pubRepo"', directly.

_M_e_t_h_o_d_s:

     _p_a_r_s_e_D_a_t_a 'signature(object = "EG")': A method to parse a source
          file using a specified parser

_A_u_t_h_o_r(_s):

     Jianhua Zhang

_S_e_e _A_l_s_o:

     'pubRepo-class'

