| getAllGO {davidTiling} | R Documentation |
The function uses the GO categories in the data.frame gff to
obtain annotated GO categories, then the GO**ANCESTOR data in the
GO package to add all parent terms as well.
getAllGO(x, gff)
x |
character vector. |
gff |
data.frame with columns feature, Name, and
(Ontology_term or attributes), see details |
The elements of x are matched against the column
gene in gff. All are required to match.
A list of GO terms is then extracted from the corresponding
rows in the Ontology_term column. A gene may be annotated by
several terms, separated by ",". Then the GO package is used to
augment this by all ancestor terms.
List of character vectors.
W. Huber <huber@ebi.ac.uk>