neveCGHmatch            package:Neve2006            R Documentation

_N_e_v_e _C_a_n_c_e_r _C_e_l_l _2_0_0_6 _e_x_p_r_e_s_s_i_o_n _p_l_u_s _C_G_H _d_a_t_a

_D_e_s_c_r_i_p_t_i_o_n:

     ExpressionSet and cghSet

_U_s_a_g_e:

     data(neveCGHmatch)
     data(neveRMAmatch)
     data(neveCels)

_F_o_r_m_a_t:

     a cghSet for neveCGHmatch and an ExpressionSet for neveRMAmatch. 
     There are only 50 samples because only 50 could be aligned on the
     given sample name tokens in the caArrayDB data as of June 9 2007.
     Those sample name tokens are very mangled in the CEL files.

     the neveCels data are an AffyBatch with original sample names.

_S_o_u_r_c_e:

     links are provided in the pdf of the Cancer Cell paper; see the
     PMID of 'experimentData(neveCGHmatch)'

_R_e_f_e_r_e_n_c_e_s:

     PMID 17157791

_E_x_a_m_p_l_e_s:

     data(neveCGHmatch)
     neveCGHmatch
     logRatios(neveCGHmatch)[1:4,1:4]
     data(neveRMAmatch)
     neveRMAmatch

