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| affyQAReport | Generate a QA Report for Affymetrix arrays |
| borderQC1 | Distribution of intensities of the border elements |
| borderQC2 | Center of intensity QC plots |
| correlationPlot | Array-array intensity correlation plot |
| dist2 | Calculate an n-by-n matrix by applying a function to pairs of columns of an m-by-n matrix. |
| openQAReport | Generate a QA Report for Affymetrix arrays |
| QCReport | QC Report for AffyBatch objects |
| QCReport-correlationPlot | Array-array intensity correlation plot |
| QCReport-signalDist | Intensity distribution plots for a AffyBatch object |
| QCReport-titlePage | QC report title page with array names |
| rmQAReport | Generate a QA Report for Affymetrix arrays |
| signalDist | Intensity distribution plots for a AffyBatch object |
| titlePage | QC report title page with array names |