Entry: DrawContourlines
Aliases: DrawContourlines
Keywords: aplot
Description: Draw and label a set of pre-calculated isolines
URL: ../../../library/OCplus/html/DrawContourlines.html

Entry: EOC
Aliases: EOC FDRp
Keywords: hplot htest
Description: Estimated or empirical FDR, sensitivity, etc as a function of cutoff level
URL: ../../../library/OCplus/html/EOC.html

Entry: FDR
Aliases: FDR CDF CDFmix FDR.paired CDF.paired CDFmix.paired
Keywords: utilities distribution
Description: Compute FDR for general scenarios
URL: ../../../library/OCplus/html/FDR.html

Entry: MAsim.smyth
Aliases: MAsim.smyth MAsim MAsim.var MAsim.real
Keywords: models
Description: Simulate two-sample microarray data
URL: ../../../library/OCplus/html/MAsim.smyth.html

Entry: OCshow
Aliases: OCshow
Keywords: aplot hplot
Description: Show one ore several OC curves graphically
URL: ../../../library/OCplus/html/OCshow.html

Entry: TOC
Aliases: TOC
Keywords: hplot design
Description: Theoretical FDR and sensitivity as a function of cutoff level
URL: ../../../library/OCplus/html/TOC.html

Entry: Undocumented functions
Aliases: DoConstrain MidBreaks MidBreaks.t Rinv approx2d brk2mid df2var dgfree dmt dmt.paired dmtmix dmtmix.paired gausei lfdr lfdr.paired rmatrix smooth2d.basic smooth2d.direct
Keywords: internal
Description: Undocumented functions
URL: ../../../library/OCplus/html/Undocumented.html

Entry: average.fdr
Aliases: average.fdr
Keywords: utilities
Description: Average a two-dimensional local false discovery rate
URL: ../../../library/OCplus/html/average.fdr.html

Entry: fdr1d
Aliases: fdr1d
Keywords: htest
Description: Compute classical local false discovery rate
URL: ../../../library/OCplus/html/fdr1d.html

Entry: fdr2d
Aliases: fdr2d
Keywords: htest
Description: Compute two-dimensional local false discovery rate
URL: ../../../library/OCplus/html/fdr2d.html

Entry: plot.FDR.result
Aliases: plot.FDR.result
Keywords: hplot aplot
Description: Plot the empirical FDR as a function of the cutoff level
URL: ../../../library/OCplus/html/plot.FDR.result.html

Entry: plot.fdr1d.result
Aliases: plot.fdr1d.result
Keywords: hplot aplot
Description: Plot univariate local false discovery output
URL: ../../../library/OCplus/html/plot.fdr1d.result.html

Entry: plot.fdr2d.result
Aliases: plot.fdr2d.result Volcanoplot Tornadoplot
Keywords: hplot aplot
Description: Plotting the bivariate local false discovery results
URL: ../../../library/OCplus/html/plot.fdr2d.result.html

Entry: samplesize
Aliases: samplesize
Keywords: hplot design
Description: FDR as a function of sample size
URL: ../../../library/OCplus/html/samplesize.html

Entry: smooth1d
Aliases: smooth1d
Keywords: smooth
Description: Smoothing a vector of counts
URL: ../../../library/OCplus/html/smooth1d.html

Entry: summary.fdr.result
Aliases: summary.fdr.result p0 topDE
Keywords: print utilities
Description: Display functions for local fdr output
URL: ../../../library/OCplus/html/summary.fdr.result.html

Entry: tMixture
Aliases: tMixture
Keywords: models univar
Description: Fit a mixture of t-distributions
URL: ../../../library/OCplus/html/tMixture.html

Entry: tstatistics
Aliases: tstatistics PermNull
Keywords: univar utilities
Description: Compute multiple parallel t-statistics
URL: ../../../library/OCplus/html/tstatistics.html
