mouseCHRLOC13START        package:mouseCHRLOC        R Documentation

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_D_e_s_c_r_i_p_t_i_o_n:

     mouseCHRLOC13START maps Entrez Gene identifiers to the
     transciption starting locations of genes on chromosome number 13
     corresponding to the Entrez Gene identifiers

_D_e_t_a_i_l_s:

     This is an environment object containing key and value pairs. Keys
     are Entrez Gene identifiers and values are the transciption
     starting location for genes. The starting positions for genes on
     both the sense and antisense strand are number of base pairs
     measured from the p (5' end of the sense strand) to q (3' end of
     the sense strand) arms. Values for the antisense strand have a
     leading "-" sign (e. g. -1234567).

     Values for keys are named vectors of length 1 derived from the
     smallest starting value found for the Entrez Gene identifier.
     Names of chromosome location values can be "Confident" when the
     gene can be confidently placed on a chromosome and "Unconfident"
     otherwise (denoted by "_random" in UCSC data).

     Mappings were derived from the following public data sources:

     Golden Path:<URL:
     http://gopher5/compbio/annotationSourceData/hgdownload.cse.ucsc.ed
     u/goldenPath/currentGenomes//Mus_musculus/database/>. Built: No
     build info available.

     Package built: Wed Sep  6 12:13:20 2006

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.genome.ucsc.edu/goldenPath/hg16/database/>

_E_x_a_m_p_l_e_s:

             require("annotate") || stop("annotate unavailable")
             xx <- as.list(mouseCHRLOC13START)
             if(length(xx) > 0){
                     # Get the value of the first key
                     xx[1]
                     # Get the values for a few keys
                     if(length(xx) >= 3){
                         xx[1:3]
                     }
             }

