add.target2href	siggenes-internal
adjust.for.mt	siggenes-internal
args.sam	help.sam
build.dperm	siggenes-internal
cat.stat	siggenes-internal
check.chipname	siggenes-internal
col2hex	siggenes-internal
d.null	siggenes-internal
d.stat	siggenes-internal
delta.plot	delta.plot
ebam	ebam
ebam.old	siggenes-internal
ebam.wilc	ebam.wilc
ebam.wilc.old	siggenes-internal
filterALL	siggenes-internal
find.a0	find.a0
find.a0.old	siggenes-internal
formatSAM	siggenes-internal
fudge2	fudge2
getTD4Affy	siggenes-internal
help.sam	help.sam
identify,SAM-method	SAM-class
link.genes	link.genes
link.siggenes	link.siggenes
list.siggenes	list.siggenes
make.tablecode	siggenes-internal
na.handling	na.handling
na.replace.cont	na.replace.cont
na.replace.dist	na.replace.dist
neglogLik.repeat	siggenes-internal
p0.est	siggenes-internal
pairt.cl.transform	siggenes-internal
pairt.samp	siggenes-internal
pairt.samp.transform	siggenes-internal
pi0.est	pi0.est
plot,SAM-method	SAM-class
plotArguments	sam.plot2
pretty.mat.fdr	siggenes-internal
pretty.mat.sig	siggenes-internal
print,SAM-method	SAM-class
print,sumSAM-method	sumSAM-class
q.value.old	siggenes-internal
q.value.wilc	siggenes-internal
quantiles	siggenes-internal
qvalue.cal	qvalue.cal
R.fold.old	siggenes-internal
ratio.est	siggenes-internal
Rfold.cal	siggenes-internal
rs.cal	siggenes-internal
SAM	SAM-class
sam	sam
SAM-class	SAM-class
sam.dstat	sam.dstat
sam.plot2	sam.plot2
sam.sampler	siggenes-internal
sam.snp	sam.snp
sam.wilc	sam.wilc
sam2excel	sam2excel
sam2html	sam2html
setup.mat.samp	siggenes-internal
show,SAM-method	SAM-class
show,sumSAM-method	sumSAM-class
stats.cal	siggenes-internal
summary,SAM-method	SAM-class
sumSAM-class	sumSAM-class
wilc.stat	siggenes-internal
xy.cal	siggenes-internal
