discretizeAll             package:macat             R Documentation

_D_i_s_c_r_e_t_i_z_e _c_o_m_p_l_e_t_e _e_x_p_r_e_s_s_i_o_n _m_a_t_r_i_x

_D_e_s_c_r_i_p_t_i_o_n:

     perform discretization on all chromosomes and write python flat
     files

_U_s_a_g_e:

     discretizeAll(data, margin = 10)

_A_r_g_u_m_e_n_t_s:

    data: MACATData Object 

  margin: symmetric quantile in percent 

_D_e_t_a_i_l_s:

     The filename for the python flat files are 
     'discrete_seqs_margin_<margin>_chrom_<chrom>.py'  where <chrom>
     and <margin> are the names of the chromosome and the margin used
     for discretization. For details on the discretization see
     'discretize'.

_V_a_l_u_e:

     produces python flat file

_A_u_t_h_o_r(_s):

     The MACAT Development team

_S_e_e _A_l_s_o:

     'discretize'

_E_x_a_m_p_l_e_s:

      
      # !!! takes some time !!!
      ## Not run: 
       #loaddatapkg("stjudem")
       data(stjd)
       discretizeAll(stjd, margin=10) 
      
     ## End(Not run)

