Entry: Bscore
Aliases: Bscore
Keywords: manip
Description: B score normalization
URL: ../../../library/cellHTS/html/Bscore.html

Entry: ROC
Aliases: ROC plot.ROC lines.ROC
Keywords: univar
Description: Creates an object of class "ROC" which can be plotted as a ROC curve
URL: ../../../library/cellHTS/html/ROC.html

Entry: annotate
Aliases: annotate annotate.cellHTS
Keywords: manip
Description: Annotates the gene IDs of a given cellHTS object
URL: ../../../library/cellHTS/html/annotate.html

Entry: bdgpbiomart
Aliases: bdgpbiomart
Keywords: datasets
Description: Dataset with annotation of CG identifiers
URL: ../../../library/cellHTS/html/bdgpbiomart.html

Entry: configure
Aliases: configure configure.cellHTS
Keywords: manip
Description: Configures the plates and plate result files
URL: ../../../library/cellHTS/html/configure.html

Entry: KcViab
Aliases: KcViab
Keywords: datasets
Description: A sample cellHTS object - D. melanogaster genome-wide RNAi screen
URL: ../../../library/cellHTS/html/data-KcViab.html

Entry: KcViabSmall
Aliases: KcViabSmall
Keywords: datasets
Description: A sample cellHTS object - D. melanogaster genome-wide RNAi screen
URL: ../../../library/cellHTS/html/data-KcViabSmall.html

Entry: getLibraryPlate
Aliases: getLibraryPlate
Keywords: manip
Description: 384-well plate assay format to a 96-well plate library format
URL: ../../../library/cellHTS/html/getLibraryPlate.html

Entry: getMatrix
Aliases: getMatrix
Keywords: manip
Description: Create a matrix with replicate data in columns
URL: ../../../library/cellHTS/html/getMatrix.html

Entry: imageScreen
Aliases: imageScreen
Keywords: manip
Description: Experiment-wide quality control plot of a cellHTS object
URL: ../../../library/cellHTS/html/imageScreen.html

Entry: normalizeChannels
Aliases: normalizeChannels
Keywords: manip
Description: Normalization of dual-channel data and data transformation
URL: ../../../library/cellHTS/html/normalizeChannels.html

Entry: normalizePlates
Aliases: normalizePlates plate effects
Keywords: manip
Description: Plate-wise data normalization, and data transformation
URL: ../../../library/cellHTS/html/normalizePlates.html

Entry: oneRowPerId
Aliases: oneRowPerId
Keywords: manip
Description: Rearrange dataframe entries such that there is exactly one row per ID.
URL: ../../../library/cellHTS/html/oneRowPerId.html

Entry: plotPlateLibrary
Aliases: plotPlateLibrary
Keywords: manip
Description: Plate plot of the raw data of the four consecutive 96-well plates of a given 384-well plate
URL: ../../../library/cellHTS/html/plotPlateLibrary.html

Entry: plotSpatialEffects
Aliases: plotSpatialEffects
Keywords: manip
Description: Plate plot with the row and column offsets estimated by the B score method
URL: ../../../library/cellHTS/html/plotSpatialEffects.html

Entry: print.cellHTS
Aliases: print.cellHTS
Keywords: print
Description: Printing cellHTS objects
URL: ../../../library/cellHTS/html/print.cellHTS.html

Entry: readPlateData
Aliases: readPlateData
Keywords: manip
Description: Read a collection of plate reader data files
URL: ../../../library/cellHTS/html/readPlateData.html

Entry: screenMatch
Aliases: screenMatch
Keywords: manip
Description: Matching the gene annotation of two screens
URL: ../../../library/cellHTS/html/screenMatch.html

Entry: summarizeReplicates
Aliases: summarizeReplicates
Keywords: manip
Description: Summarizes between normalized replicate values given in a cellHTS object, obtaining a single z-score for each probe
URL: ../../../library/cellHTS/html/summarizeReplicates.html

Entry: write.tabdel
Aliases: write.tabdel
Keywords: manip
Description: Wrapper to function 'write.table' used to write data to a tab-delimited file
URL: ../../../library/cellHTS/html/write.tabdel.html

Entry: writeReport
Aliases: writeReport
Keywords: manip
Description: Create a directory with HTML pages of linked tables and plots documenting the contents of a cellHTS object
URL: ../../../library/cellHTS/html/writeReport.html

Entry: writeTab
Aliases: writeTab writeTab.cellHTS
Keywords: manip
Description: Write the data from a cellHTS object to a tab-delimited file
URL: ../../../library/cellHTS/html/writeTab.html
