aslFDAdvectionDiffusionExtended.h

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/*
 * Advanced Simulation Library <http://asl.org.il>
 * 
 * Copyright 2015 Avtech Scientific <http://avtechscientific.com>
 *
 *
 * This file is part of Advanced Simulation Library (ASL).
 *
 * ASL is free software: you can redistribute it and/or modify it
 * under the terms of the GNU Affero General Public License as
 * published by the Free Software Foundation, version 3 of the License.
 *
 * ASL is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU Affero General Public License for more details.
 *
 * You should have received a copy of the GNU Affero General Public License
 * along with ASL. If not, see <http://www.gnu.org/licenses/>.
 *
 */
 
 
#ifndef ASLFDADVECTIONDIFFUSION_H
#define ASLFDADVECTIONDIFFUSION_H
 
#include "../num/aslNumMethod.h"
 
 
namespace acl{
  class Kernel;
  class VectorOfElementsData;
}
 
namespace asl
{
  class VectorTemplate;
  template <typename V> class DataWithGhostNodes;
  typedef DataWithGhostNodes<acl::VectorOfElementsData> DataWithGhostNodesACLData;
  typedef std::shared_ptr<DataWithGhostNodesACLData> SPDataWithGhostNodesACLData;
  class AbstractDataWithGhostNodes;
  typedef std::shared_ptr<AbstractDataWithGhostNodes> SPAbstractDataWithGhostNodes;
  

  class FDAdvectionDiffusionExtended: public NumMethod
  {
    public:
      typedef SPDataWithGhostNodesACLData Data;
      typedef SPAbstractDataWithGhostNodes ScalarField;
    private:
      std::unique_ptr<acl::Kernel> kernel; 
      
      std::vector<Data> cData;
      std::vector<Data> cInternalData;      
 
      bool electricField;
      ScalarField efPhi;
      ScalarField efFactor1;
      ScalarField efFactor2;
      std::vector<ScalarField> efChargeAnd;
        
      const VectorTemplate* vectorTemplate;
 
      int t;
      std::vector<double> diffusionCoefficient;
    public:     
      FDAdvectionDiffusionExtended();
      FDAdvectionDiffusionExtended(Data c, double dC,const VectorTemplate* vT);
      void setDiffusionCoefficient(double d, unsigned int i=0);
      double getDiffusionCoefficient(unsigned int i=0);
      void setVectorTemplate(VectorTemplate* vT);
      VectorTemplate setVectorTemplate(const VectorTemplate* vT);
      void setElectricFieldParameters(ScalarField phi, ScalarField f1, ScalarField f2, ScalarField qAnd);
      virtual void init();
      virtual void execute();
      void addComponent(Data c, double dC);
      void addComponent(Data c, double dC, ScalarField qAnd);     
      
  };
 
  typedef std::shared_ptr<FDAdvectionDiffusionExtended> SPFDAdvectionDiffusionExtended;
 
    
} // asl
#endif // ASLFDADVECTIONDIFFUSION_H