      9   888

human  
AAGCTTCACC GGCGCAGTCA TTCTCATAAT CGCCCACGGA CTTACATCCT CATTACTATT      60
CTGCCTAGCA AACTCAAACT ACGAACGCAC TCACAGTCGC ATCATAATCC TCTCTCAAGG     120
ACTTCAAACT CTACTCCCAC TAATAGCTTT TTGATGACTT CTAGCAAGCC TCGCTAACCT     180
CGCCTTACCC CCCACTATTA ACCTACTGGG AGAACTCTCT GTGCTAGTAA CCACGTTCTC     240
CTGATCAAAT ATCACTCTCC TACTTACAGG ACTCAACATA CTAGTCACAG CCCTATACTC     300
CCTCTACATA TTTACCACAA CACAATGGGG CTCACTCACC CACCACATTA ACAACATAAA     360
ACCCTCATTC ACACGAGAAA ACACCCTCAT GTTCATACAC CTATCCCCCA TTCTCCTCCT     420
ATCCCTCAAC CCCGACATCA TTACCGGGTT TTCCTCTTGT AAATATAGTT TAACAAAACA     480
TCAGATTGTG AATCTGACAA CAGAGGCTTA CGCCCCTTAT TTACCGAGAA AGCTCACAAG     540
AACTGCTAAC TCATGCCCCA TGTCTGACAA CATGGCTTTC TCACTTTTAA AGGATAACAG     600
CTATCCATTG GTCTTAGGCC CCAAAAATTT GGTGCAACTC CAAATAAAAG TAATAATGCA     660
CACTACTATA ACCACCCTAA CCCTGACTTC CCTAATTCCC CCCATCCTTA CCACCCTCGT     720
TAACCCTAAC AAAAAAAACT CATACCCCCA TTATGTAAAA TCCATTGTCG CATCCACCTT     780
TATTATCAGT CTCTTCCCCA CAACAATATT CATGTGCCTA GACCAAGAAG TTATTATCTC     840
GAACTGACAC TGAGCCACAA CCCAAACAAC CCAGCTCTCC CTAAGCTT                  888

chimpanzee
AAGCTTCACC GGCGCAATTA TCCTCATAAT CGCCCACGGA CTTACATCCT CATTATTATT      60
CTGCCTAGCA AACTCAAATT ATGAACGCAC CCACAGTCGC ATCATAATTC TCTCCCAAGG     120
ACTTCAAACT CTACTCCCAC TAATAGCCTT TTGATGACTC CTAGCAAGCC TCGCTAACCT     180
CGCCCTACCC CCTACCATTA ATCTCCTAGG GGAACTCTCC GTGCTAGTAA CCTCATTCTC     240
CTGATCAAAT ACCACTCTCC TACTCACAGG ATTCAACATA CTAATCACAG CCCTGTACTC     300
CCTCTACATG TTTACCACAA CACAATGAGG CTCACTCACC CACCACATTA ATAACATAAA     360
GCCCTCATTC ACACGAGAAA ATACTCTCAT ATTTTTACAC CTATCCCCCA TCCTCCTTCT     420
ATCCCTCAAT CCTGATATCA TCACTGGATT CACCTCCTGT AAATATAGTT TAACAAAACA     480
TCAGATTGTG AATCTGACAA CAGAGGCTCA CGCCCCTTAT TTACCGAGAA AGCTTATAAG     540
AACTGCTAAT TCATATCCCA TGCCTGACAA CATGGCTTTC TCACTTTTAA AGGATAACAG     600
CCATCCGTTG GTCTTAGGCC CCAAAAATTT GGTGCAACTC CAAATAAAAG TAATAATGTA     660
TACTACCATA ACCACCTTAA CCCTAACTCC CTTAATTCTC CCCATCCTCA CCACCCTCAT     720
TAACCCTAAC AAAAAAAACT CATATCCCCA TTATGTGAAA TCCATTATCG CGTCCACCTT     780
TATCATTAGC CTTTTCCCCA CAACAATATT CATATGCCTA GACCAAGAAG CTATTATCTC     840
AAACTGGCAC TGAGCAACAA CCCAAACAAC CCAGCTCTCC CTAAGCTT                  888

gorilla   
AAGCTTCACC GGCGCAGTTG TTCTTATAAT TGCCCACGGA CTTACATCAT CATTATTATT      60
CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC ATCATAATTC TCTCTCAAGG     120
ACTCCAAACC CTACTCCCAC TAATAGCCCT TTGATGACTT CTGGCAAGCC TCGCCAACCT     180
CGCCTTACCC CCCACCATTA ACCTACTAGG AGAGCTCTCC GTACTAGTAA CCACATTCTC     240
CTGATCAAAT ACCACCCTTT TACTTACAGG ATCTAACATA CTAATCACAG CCCTGTACTC     300
CCTTTATATA TTTACCACAA CACAATGAGG CCCACTCACA CACCACATCA CCAACATAAA     360
ACCCTCATTT ACACGAGAAA ACATCCTCAT ATTCATGCAC CTATCCCCCA TCCTCCTCCT     420
ATCCCTCAAC CCCGATATTA TCACCGGGTT CACCTCCTGT AAATATAGTT TAACAAAACA     480
TCAGATTGTG AATCTGATAA CAGAGGCTCA CACCCCTTAT TTACCGAGAA AGCTCGTAAG     540
AGCTGCTAAC TCATACCCCG TGCTTGACAA CATGGCTTTC TCACTTTTAA AGGATAACAG     600
CTATCCATTG GTCTTAGGAC CCAAAAATTT GGTGCAACTC CAAATAAAAG TAATAATGTA     660
CGCTACCATA ACCACCTTAG CCCTAACTTC CTTAATTCCC CCTATCCTTA CCACCTTCAT     720
CAATCCTAAC AAAAAAAGCT CATACCCCCA TTACGTAAAA TCTATCGTCG CATCCACCTT     780
TATCATCAGC CTCTTCCCCA CAACAATATT TCTATGCCTA GACCAAGAAG CTATTATCTC     840
AAGCTGACAC TGAGCAACAA CCCAAACAAT TCAACTCTCC CTAAGCTT                  888

orang-utan
AAGCTTCACC GGCGCAACCA CCCTCATGAT TGCCCATGGA CTCACATCCT CCCTACTGTT      60
CTGCCTAGCA AACTCAAACT ACGAACGAAC CCACAGCCGC ATCATAATCC TCTCTCAAGG     120
CCTTCAAACT CTACTCCCCC TAATAGCCCT CTGATGACTT CTAGCAAGCC TCACTAACCT     180
TGCCCTACCA CCCACCATCA ACCTTCTAGG AGAACTCTCC GTACTAATAG CCATATTCTC     240
TTGATCTAAC ATCACCATCC TACTAACAGG ACTCAACATA CTAATCACAA CCCTATACTC     300
TCTCTATATA TTCACCACAA CACAACGAGG TACACCCACA CACCACATCA ACAACATAAA     360
ACCTTCTTTC ACACGCGAAA ATACCCTCAT GCTCATACAC CTATCCCCCA TCCTCCTCTT     420
ATCCCTCAAC CCCAGCATCA TCGCTGGGTT CGCCTACTGT AAATATAGTT TAACAAAACA     480
TTAGATTGTG AATCTAATAA TAGGGCCCCA CACCCCTTAT TTACCGAGAA AGCTCACAAG     540
AACTGCTAAC TCTCACTCCA TGTGTGACAA CATGGCTTTC TCGCTTTTAA AGGATAACAG     600
CTATCCCTTG GTCTTAGGAT CCAAAAATTT GGTGCAACTC CAAATAAAAG TAACAATGTT     660
TACCACCATA ACTGCCCTCA CCTTAACTTC CCTAATCCCC CCCATTACCG CTACCCTCAT     720
TAACCCCAAC AAAAAAAACC CATACCCCCA CTATGTAAAA ACGGCCATCG CATCCGCCTT     780
TACTATCAGC CTTATCCCAA CAACAATATT TATCTGCCTA GGACAAGAAA CCATCGTCAC     840
AAACTGATGC TGAACAACCA CCCAGACACT ACAACTCTCA CTAAGCTT                  888

gibbon    
AAGCTTTACA GGTGCAACCG TCCTCATAAT CGCCCACGGA CTAACCTCTT CCCTGCTATT      60
CTGCCTTGCA AACTCAAACT ACGAACGAAC TCACAGCCGC ATCATAATCC TATCTCGAGG     120
GCTCCAAGCC TTACTCCCAC TGATAGCCTT CTGATGACTC GCAGCAAGCC TCGCTAACCT     180
CGCCCTACCC CCCACTATTA ACCTCCTAGG TGAACTCTTC GTACTAATGG CCTCCTTCTC     240
CTGGGCAAAC ACTACTATTA CACTCACCGG GCTCAACGTA CTAATCACGG CCCTATACTC     300
CCTTTACATA TTTATCATAA CACAACGAGG CACACTTACA CACCACATTA AAAACATAAA     360
ACCCTCACTC ACACGAGAAA ACATATTAAT ACTTATGCAC CTCTTCCCCC TCCTCCTCCT     420
AACCCTCAAC CCTAACATCA TTACTGGCTT TACTCCCTGT AAACATAGTT TAATAAAACA     480
TTAGATTGTG AATCTAACAA TAGAGGCTCG AACCTCTTGC TTACCGAGAA AGCCCACAAG     540
AACTGCTAAC TCACTATCCA TGTATGACAA CATGGCTTTC TCACTTTTAA AGGATAACAG     600
CTATCCATTG GTCTTAGGAC CCAAAAATTT GGTGCAACTC CAAATAAAAG TAATAATGTA     660
CACCACCATA GCCATTCTAA CGCTAACCTC CCTAATTCCC CCCATTACAG CCACCCTTAT     720
TAACCCCAAT AAAAAGAACT TATACCCGCA CTACGTAAAA ATGACCATTG CCTCTACCTT     780
TATAATCAGC CTATTTCCCA CAATAATATT CATGTGCACA GACCAAGAAA CCATTATTTC     840
AAACTGACAC TGAACTGCAA CCCAAACGCT AGAACTCTCC CTAAGCTT                  888

ce macaque
AAGCTTCTCC GGCGCAACCA CCCTTATAAT CGCCCACGGG CTCACCTCTT CCATGTATTT      60
CTGCTTGGCC AATTCAAACT ATGAGCGCAC TCATAACCGT ACCATACTAC TATCCCGAGG     120
ACTTCAAATT CTACTTCCAT TGACAGCCTT CTGATGACTC ACAGCAAGCC TTACTAACCT     180
TGCCCTACCC CCCACTATTA ATCTACTAGG CGAACTCTTT GTAATCACAA CTTCATTTTC     240
CTGATCCCAT ATCACCATTG TGTTAACGGG CCTTAATATA CTAATCACAG CCCTCTACTC     300
TCTCCACATG TTCATTACAG TACAACGAGG AACACTCACA CACCACATAA TCAATATAAA     360
ACCCCCCTTC ACACGAGAAA ACATATTAAT ATTCATACAC CTCGCTCCAA TTATCCTTCT     420
ATCTCTCAAC CCCAACATCA TCCTGGGGTT TACCTCCTGT AAATATAGTT TAACAAAACA     480
TTAGATTGTG AATCTAACTA TAGAGGCCTA CCCTTCTTAT TTACCGAGAA AACTCGCAAG     540
GACTGCTAAT CCATGCCCCG TACTTAAAAC TACGGTTTCC TCACTTTTAA AGGATAACAG     600
CTATCCATTG ACCTTAGGAG TCAAAAAATT GGTGCAACTC CAAATAAAAG TAATAATGCA     660
CACCCCCATC ATAATAACAA CCCTCATCTC CCTGACCCTT CCAATTTTTG CCACCCTCAC     720
CAACCCCTAT AAAAAACGTT CATACCCAGA CTACGTAAAA ACAACCGTAA TATATGCTTT     780
TATTACCAGT CTCCCCTCAA CAACCCTATT CATCCTCTCA AACCAAGAAA CAACCATTTG     840
GAGTTGACAT TGAATAACAA CCCAAACATT AGACCTAACA CTAAGCTT                  888

s monkey  
AAGCTTCACC GGCGCAATGA TCCTAATAAT CGCTCACGGG TTTACTTCGT CTATGCTATT      60
CTGCCTAGCA AACTCAAATT ACGAACGAAT TCACAGCCGA ACAATAACAT TTACTCGAGG     120
GCTCCAAACA CTATTCCCGC TTATAGGCCT CTGATGACTC CTAGCAAATC TCGCTAACCT     180
CGCCCTACCA CCAGCTATTA ATCTAGTAGG AGAATTACTC ACAATCGTAT CTTCCTTCTC     240
TTGATCCAAC TTTACTATTA TATTCACAGG ACTTAATATA CTAATTACAG CACTCTACTC     300
ACTTCATATG TATGCCTCTA CACAGCGAGG TCCACTTACA TACAGCACCA GCAATATAAA     360
ACCAATATTT ACACGAGAAA ATACGCTAAT ATTTATACAT ATAACACCAA TCCTCCTCCT     420
TACCTTGAGC CCCAAGGTAA TTATAGGACC CTCACCTTGT AATTATAGTT TAGCAAAACA     480
TTAGATTGTG AATCTAATAA TAGAAGAATA TACTTCTTAA TTACCGAGAA AGTGCGCAAG     540
AACTGCTAAT TCATGCTCCA AGACTAACAA CTTGGCTTCC TCACTTTTAA AGGATAGTAG     600
TTATCCATTG GTCTTAGGAG CCAAAAAATT GGTGCAACTC CAAATAAAAG TAATAATACA     660
CTTCTCCATC ACTCTAATAA CACTAATTAG CCTACTAGCG CCAATCCTAG CTACCCTCAT     720
TAACCCTAAC AAAAGCACAC TATACCCGTA CTACGTAAAA CTAGCCATCA TCTACGCCCT     780
CATTACCAGT ACCTTATCTA TAATATTCTT TATCCTTACA GGCCAAGAAT CAATAATTTC     840
AAACTGACAC TGAATAACTA TCCAAACCAT CAAACTATCC CTAAGCTT                  888

tarsier   
AAGTTTCATT GGAGCCACCA CTCTTATAAT TGCCCATGGC CTCACCTCCT CCCTATTATT      60
TTGCCTAGCA AATACAAACT ACGAACGAGT CCACAGTCGA ACAATAGCAC TAGCCCGTGG     120
CCTTCAAACC CTATTACCTC TTGCAGCAAC ATGATGACTC CTCGCCAGCT TAACCAACCT     180
GGCCCTTCCC CCAACAATTA ATTTAATCGG TGAACTGTCC GTAATAATAG CAGCATTTTC     240
ATGGTCACAC CTAACTATTA TCTTAGTAGG CCTTAACACC CTTATCACCG CCCTATATTC     300
CCTATATATA CTAATCATAA CTCAACGAGG AAAATACACA TATCATATCA ACAATATCAT     360
GCCCCCTTTC ACCCGAGAAA ATACATTAAT AATCATACAC CTATTTCCCT TAATCCTACT     420
ATCTACCAAC CCCAAACTAA TTATAGGAAC CATGTACTGT AAATATAGTT TAAAAAAACA     480
TTAGATTGTG AGTCTAATAA TAGAAGCCCA AGTTTCTTAT TTACCAAGAA AGTATGCAAG     540
AACTGCTAAC TCATGCCCCA TATATAACAA TGTGGCTTTC TTACTTTTAA AGGATAGAAG     600
TAATCCATCG GTCTTAGGAA CCGAAAAATT GGTGCAACTC CAAATAAAAG TAATATTATT     660
TTCATCCTCC ATTTTACTAT CACTTACACT CTTAATTACC CCATTTATTA TTACAACAAC     720
TAAAAAATAT GAAACACATG CATACCCTTA CTACGTAAAA AACTCTATCG CCTGCGCATT     780
TATAACAAGC CTAGTCCCAA TGCTCATATT TCTATACACA AATCAAGAAA TAATCATTTC     840
CAACTGACAT TGAATAACGA TTCATACTAT GAAATTATGC CTAAGCTT                  888

lemur     
AAGCTTCATA GGAGCAACCA TTCTAATAAT CGCACATGGC CTTACATCAT CCATATTATT      60
CTGTCTAGCC AACTCTAACT ACGAACGAAT CCATAGCCGT ACAATACTAC TAGCACGAGG     120
GATCCAAACC ATTCTCCCTC TTATAGCCAC CTGATGACTA CTCGCCAGCC TAACTAACCT     180
AGCCCTACCA CCCTCTATCA ATTTAATTGG CGAACTATTC GTCACTATAG CATCCTTCTC     240
ATGATCAAAC ATTACAATTA TCTTAATAGG CTTAAATATG CTCATCACCG CTCTCTATTC     300
CCTCTATATA TTAACTACTA CACAACGAGG AAAACTCACA TATCATTCGC ACAACCTAAA     360
CCCATCCTTT ACACGAGAAA ACACCCTTAT ATCCATACAC ATACTCCCCC TTCTCCTATT     420
TACCTTAAAC CCCAAAATTA TTCTAGGACC CACGTACTGT AAATATAGTT TAAAAAAACA     480
CTAGATTGTG AATCCAGAAA TAGAAGCTCA ACCTTCTTAT TTACCGAGAA AGTATGTATG     540
AACTGCTAAC TCTGCACCCG TATATAAAAA TACGGCTATC TCACTTTTAA AGGATAGAAG     600
TAATCCATTG GCCTTAGGAG CCAAAAAATT GGTGCAACTC CAAATAAAAG TAATACTATT     660
ATCCTCTTTC ACCCTTGTCA CACTGATTAT CCTAACTTTA CCTATCATTA TAAACGTTAC     720
AAACATATAC AAAAACTACC CCTATGCACC ATACGTAAAA TCTTCTATTG CATGTGCCTT     780
CATCACTAGC CTCATCCCAA CTATATTATT TATCTCCTCA GGACAAGAAA CAATCATTTC     840
CAACTGACAT TGAATAACAA TCCAAACCCT AAAACTATCT ATTAGCTT                  888


_____________________________________________________________

      9   888  

_____________________________________________________________
      9   888  G
G   4
3
123123123123123123123123123123123123123123123123123123123123
123123123123123123123123123123123123123123123123123123123123
123123123123123123123123123123123123123123123123123123123123
123123123123123123123123123123123123123123123123123123123123
123123123123123123123123123123123123123123123123123123123123
123123123123123123123123123123123123123123123123123123123123
123123123123123123123123123123123123123123123123123123123123
1231231231231231231231231231231231231
444444444444444444444444444444444444444444444444444444444444
444444444444444444444444444444444444444444444444444444444444
444444444444444444444444444444444444444444444444444444444444
44444444444 444
123123123123123123123123123123123123123123123123123123123123
123123123123123123123123123123123123123123123123123123123123
123123123123123123123123123123123123123123123123123123123123
12312312312312312312312312312312312312312312312312312312

_____________________________________________________________ 
NOTE --
The last three sites in the tRNA segment was misspecified as a codon:
444 was incorrectly specied as 123, so that results for models
involving "C" in Yang (1995.  A space-time process model for the
evolution of DNA sequences. Genetics 139: 993-1005) were inaccurate.
