Class "Bed15TrackLine"

Description

A UCSC track line for graphical tracks.

Objects from the Class

Objects can be created by calls of the form new("Bed15TrackLine", ...) or parsed from a character vector track line with as(text, "Bed15TrackLine").

Slots

expStep:

A "numeric" scalar indicating the step size for the heatmap color gradient.

expScale:

A positive "numeric" scalar indicating the range of the data to be [-expScale, expScale] for determining the heatmap color gradient.

expNames:

A "character" vector naming the the experimental samples.

name:

Object of class "character" specifying the name of the track.

description:

Object of class "character" describing the track.

visibility:

Object of class "character" indicating the default visible mode of the track, see UCSCTrackModes.

color:

Object of class "integer" representing the track color (as from col2rgb).

priority:

Object of class "numeric" specifying the rank of this track.

Extends

Class "TrackLine", directly.

Methods

as(object, "character")

Export line to its string representation.

fileFormat(x)

Returns “bed15”

Author(s)

Michael Lawrence

References

Official documentation: https://genomewiki.ucsc.edu/index.php/Microarray_track.

See Also

export.bed15 for exporting bed15 tracks.